The Cancer Genome Atlas Research Network, “The Molecular Taxonomy of Primary Prostate Cancer,” Cell, Vol. 163 , No. 4 , pp. 1011-1025, 2015.
T. Knijnenburg, T. Bismeijer, L. Wessels, I. Shmulevich, “A multilevel pan-cancer map links gene mutations to cancer hallmarks,” Chinese Journal of Cancer, Vol. 34, 48, 2015.
The Cancer Genome Atlas Research Network, “Genomic Classification of Cutaneous Melanoma,” Cell, Vol. 161, No. 7, pp. 1681–1696, 2015.
The Cancer Genome Atlas Research Network, “Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas,” The New England Journal of Medicine, Vol. 372, pp. 2481-2498, 2015.
K. M. Turner, Y. Sun, P. Ji, K. J. Granberg, B. Bernard, L. Hu, D. E. Cogdell, X. Zhou, O. Yli-Harja, M. Nykter, I. Shmulevich, W. K. Yung, G. N. Fuller, W. Zhang, “Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression,” Proceedings of the National Academy of Sciences of the USA, Vol. 112, No. 11, pp. 3421-3426, 2015.
Y. Liu, M. Yasukawa, K. Chen, L. Hu, R. R. Broaddus, L. Ding, E. R. Mardis, P. Spellman, D. A. Levine, G. B. Mills, I. Shmulevich, A. K. Sood, W. Zhang, “Association of Somatic Mutations of ADAMTS Genes With Chemotherapy Sensitivity and Survival in High-Grade Serous Ovarian Carcinoma,” JAMA Oncology, 2015.
Y. Sun, F. Guo, M. Bagnoli, F.-X. Xue, B.-C. Sun, I. Shmulevich, D. Mezzanzanica, K.-X. Chen, A. Sood, D. Yang, W. Zhang, “Key nodes of a microRNA network associated with the integrated mesenchymal subtype of high-grade serous ovarian cancer,” Chinese Journal of Cancer, Vol. 34, No. 1, pp. 28-40, 2015.
G. Glusman, A. Severson, V. Dhankani, M. Robinson, T. Farrah, D. Mauldin, A. B. Stittrich, S. A. Ament, J. Roach, M. Brunkow, D. Bodian, J. Vockley, I. Shmulevich, J. Niederhuber, L. Hood, “Identification of copy number variants in whole-genome data using Reference Coverage Profiles,” Frontiers in Genetics, Vol 6, No. 45, 2015.
R. Rupaimoole, C. V. Pecot, Y. Sun, L. S. Mangala, X. Li, P. Ji, D. Cogdell, L. Hu, Y. Wang, C. Rodriguez-Aguayo, G. Lopez-Berestein, I. Shmulevich, L. De Cecco, K. Chen, D. Mezzanzanica, F. Xue, A. K. Sood, W. Zhang, “Augmentation of Response to Chemotherapy by microRNA-506 Through Regulation of RAD51 in Serous Ovarian Cancers Guoyan Liu, Da Yang,” Journal of the National Cancer Institute, Vol. 107, No. 7, djv108, 2015.