Publications

2012

R. Bressler, J. Lin, A. Eakin, T. Robinson, R. Kreisberg, H. Rovira, T. Knijnenburg, J. Boyle, I. Shmulevich, “Fastbreak: a tool for analysis and visualization of structural variations in genomic data,” EURASIP Journal on Bioinformatics and Systems Biology, Vol. 2012(1), No. 15, 2012.

G. Liu, D. Yang, Y. Sun, I. Shmulevich, F. Xue, A.K. Sood, W. Zhang, “Differing clinical impact of BRCA1 and BRCA2 mutations in serous ovarian cancer,” Pharmacogenomics, Vol. 13, No. 13, pp. 1523-1535, 2012.

The Cancer Genome Atlas Research Network, “Comprehensive Molecular Portraits of Human Breast Tumors,” Nature, Vol. 490, No. 7418, pp. 61–70, 2012.

E. R. Dougherty, I. Shmulevich, “On the Limitations of Biological Knowledge,” Current Genomics, Vol. 13, No. 7, pp. 574-587, 2012.

B. Bernard, V. Thorsson, H. Rovira, I. Shmulevich, “Increasing coverage of transcription factor position weight matrices through domain-level homology,” PLoS ONE, Vol. 7, No. 8, e42779, 2012.

The Cancer Genome Atlas Network, “Comprehensive Molecular Characterization of Human Colon and Rectal Cancer,” Nature, Vol. 487, No. 7407, pp. 330-337, 2012.

Y. Liu, Y. Sun, R. Broaddus, J. Liu, A. K. Sood, I. Shmulevich, Wei Zhang, “Integrated Analysis of Gene Expression and Tumor Nuclear Image Profiles Associated with Chemotherapy Response in Serous Ovarian Carcinoma,” PLoS ONE, Vol. 7, No. 5, e36383, 2012.