T. Erkkilä, S. Lehmusvaara, P. Ruusuvuori, T. Visakorpi, I. Shmulevich, H. Lähdesmäki, “Probabilistic analysis of gene expression measurements from heterogeneous tissues,” Bioinformatics, Vol. 26, No. 20, pp. 2571-2577, 2010.
S. A. Ramsey, T. A. Knijnenburg, K. A. Kennedy, D. E. Zak, M. Gilchrist, E. S. Gold, C. D. Johnson, A. Lampano, V. Litvak, G. Navarro, T. Stolyar, A. Aderem, I. Shmulevich, “Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites,” Bioinformatics, Vol. 26, No. 17, pp. 2071-2075, 2010.
R. A. Saleem, R. Long-O’Donnell, D. J. Dilworth, A. M. Armstrong, A. P. Jamakhandi, Y. Wan, T. A. Knijnenburg, A. Niemistö, J. Boyle, R. A. Rachubinski, I. Shmulevich, J. D. Aitchison, “Genome-Wide Analysis of Effectors of Peroxisome Biogenesis,” PLoS ONE, Vol. 5, No. 8, e11953, 2010.
D. B. Burdick, C. Cavnor, J. Handcock, S. Killcoyne, J. Lin, B. Marzolf, S. A. Ramsey, H. Rovira, I. Shmulevich, J. Boyle, “SEQADAPT: An adaptable system for the tracking, storage and analysis of high throughput sequencing experiments,” BMC Bioinformatics, Vol. 11, No. 377, 2010.
D. Yang, A. Ylipää, J. Yang, K. Hunt, R. Pollock, J. Trent, O. Yli-Harja, I. Shmulevich, M. Nykter, W. Zhang, “An integrated study of aberrant gene copy number and gene expression in GIST and LMS,” Technology in Cancer Research and Treatment, Vol. 9, No. 2, pp. 171-178, 2010.
D. J. Galas, M. Nykter, G. W. Carter, N. D. Price, I. Shmulevich, “Biological information as set-based complexity,” IEEE Transactions on Information Theory, Vol. 56, No. 2, pp. 667-677, 2010.