Publications

2003

I. Shmulevich, H. Lähdesmäki, E. R. Dougherty, J. Astola, W. Zhang, “The role of certain Post classes in Boolean network models of genetic networks,” Proceedings of the National Academy of Sciences of the USA, Vol. 100, No. 19, pp. 10734-10739, 2003.

I. Shmulevich, I. Gluhovsky, R. Hashimoto, E. R. Dougherty, and W. Zhang, “Steady-State Analysis of Genetic Regulatory Networks Modeled by Probabilistic Boolean Networks,”Comparative and Functional Genomics, Vol. 4, No. 6, pp. 601-608, 2003. [Supplementary material available here]

I. Shmulevich, “Model Selection in Genomics,” Guest Editorial in Toxicogenomics Section of Environmental Health Perspectives, Vol. 111, No. 6, May 2003, pp. A328-A329.

I. Shmulevich, J. Astola, D. Cogdell, S. R. Hamilton, and W. Zhang, “Data Extraction From Composite Oligonucleotide Microarrays,” Nucleic Acids Research, Vol. 31, No. 7, e36, 2003.

E. R. Dougherty and I. Shmulevich, “Mappings Between Probabilistic Boolean Networks,” Signal Processing, Vol. 83, No. 4, pp. 799-809, 2003.

H. Lähdesmäki, I. Shmulevich, and O. Yli-Harja, “On Learning Gene Regulatory Networks Under the Boolean Network Model,” Machine Learning, Vol. 52, pp. 147-167, 2003.

J. Morikawa, H. Li, S. Kim, K. Nishi, S. Ueno, E. Suh, E. Dougherty, I. Shmulevich, H. Shiku, W. Zhang, and T. Kobayashi, “Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARa),” International Journal of Oncology, Vol. 23, No. 3, pp. 617-625, 2003.

T. Kobayashi, M. Yamaguchi, S. Kim, J. Morikawa, S. Ogawa, S. Ueno, E. Suh, E. Dougherty, I. Shmulevich, H. Shiku, W. Zhang, “Microarray Reveals Differences in Both Tumors and Vascular Specific Gene Expression in De Novo CD5+ and CD5- Diffuse Large B-cell Lymphomas,”Cancer Research, vol. 63, pp. 60-66, January 2003.